Index

C

CancerSimulator (class in casim.casim) CancerSimulatorParameters (class in casim.casim)

casim.casim (module) check_set_number() (in module casim.casim) count_mutations() (casim.casim.CancerSimulator method)

D

death_step() (casim.casim.CancerSimulator method)

division() (casim.casim.CancerSimulator method) dump() (casim.casim.CancerSimulator method)

E

export_histogram() (casim.casim.CancerSimulator method) export_sample() (casim.casim.CancerSimulator method)

export_tumour_matrix() (casim.casim.CancerSimulator method) extend_sample() (casim.casim.CancerSimulator method)

I

increase_mut_number() (casim.casim.CancerSimulator method)

L

load_cancer_simulation() (in module casim.casim)

M

main() (in module casim.casim)

mutation() (casim.casim.CancerSimulator method) mutation_reconstruction() (casim.casim.CancerSimulator method)

N

neighbours() (casim.casim.CancerSimulator method)

P

place_to_divide() (casim.casim.CancerSimulator method)

R

run() (casim.casim.CancerSimulator method)

S

simulate_seq_depth() (casim.casim.CancerSimulator method)

T

terminate_cell() (casim.casim.CancerSimulator method)

tumour_growth() (casim.casim.CancerSimulator method)